PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Jcr4S00199.90
Common NameJCGZ_24704
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Jatropheae; Jatropha
Family AP2
Protein Properties Length: 590aa    MW: 65399.5 Da    PI: 6.4269
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Jcr4S00199.90genomeKazusaView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.46.2e-12271327155
            AP2   1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                    s+y+GV++++++gr++A+++d  + ++  ++ k  + g ++ +e+Aa+a++ a++k++g
  Jcr4S00199.90 271 SQYRGVTRHRWTGRYEAHLWDnSC-RKegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 327
                    78*******************433.44555535555.779999**************98 PP

2AP2483e-15370421155
            AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                    s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Jcr4S00199.90 370 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 421
                    78****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.81E-15271337IPR016177DNA-binding domain
PfamPF008475.1E-9271327IPR001471AP2/ERF domain
CDDcd000183.04E-19271337No hitNo description
PROSITE profilePS5103217.332272335IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-12272336IPR001471AP2/ERF domain
SMARTSM003804.8E-23272341IPR001471AP2/ERF domain
PRINTSPR003671.4E-6273284IPR001471AP2/ERF domain
PfamPF008476.0E-10370421IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-18370431IPR016177DNA-binding domain
CDDcd000182.49E-25370431No hitNo description
PROSITE profilePS5103219.006371429IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-18371429IPR001471AP2/ERF domain
SMARTSM003803.6E-34371435IPR001471AP2/ERF domain
PRINTSPR003671.4E-6411431IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MSNWLGFSLS PHLRIDEGFG REEQAAAFSS HHDISGMPLH SDGSLCVVDP FRRSSNGTQD  60
WRYENTLDAT SASEEGPKLE DFLGCYSNSP SDETKVYCQE DQIPTQNHIN RINVNVAPAF  120
TTTNNGDIDT SSGENLTNAS SLVQSYNHHY NDNPQTLIPN DNLQHCDPNP SLSHNNSIYH  180
VPFESNGTCV SGFKSWLKQN PFSSDKSSNE VNNCNFQPLS LTMSPSSQNG LVAVSPLQVI  240
DNRQRPTTVG KSLVREPVPR KSIDTFGQRT SQYRGVTRHR WTGRYEAHLW DNSCRKEGQT  300
RKGRQGGYDK EEKAARAYDL AALKYWGPTT HINFPLSTYE KELEEMKHMT RQEFVANLRR  360
KSSGFSRGAS VYRGVTRHHQ HGRWQARIGR VAGNKDLYLG TFSTQEEAAE AYDIAAIKFR  420
GTSAVTNFDI SRYDVKRICS SSTLIASDLA KRSPKHLAPA STLEDDNSCA SSTSPKPLLA  480
MTSGEASVSD ELADIVWSNA NGNEHQQQQD DNNINNDVTL VGSSSRNSSN PVNLKCSVGL  540
GTDFSDGIGD YSQGYSLQDS KYEDGNNGSN NRIGNLGLVH QVPMFALWNE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012068884.10.0PREDICTED: AP2-like ethylene-responsive transcription factor AIL1
SwissprotQ1PFE11e-138AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1
TrEMBLA0A067L8B90.0A0A067L8B9_JATCU; Uncharacterized protein
STRINGPOPTR_0003s06330.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF102743137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72570.11e-134AP2 family protein
Publications ? help Back to Top
  1. Zhang L, et al.
    Global analysis of gene expression profiles in physic nut (Jatropha curcas L.) seedlings exposed to salt stress.
    PLoS ONE, 2014. 9(5): p. e97878
    [PMID:24837971]